miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|262496700|gb|FP031559.1|FP031559 CATTCTTCCTACAATATTCTAATTGAGAACTTCCCATACATGAAGCCTTGTATCATATATAGCTCAAACGAAAAATTAAT
AAGATACAAGCTTGATTATCTAAAATTAGATAGCACTGGAACAGTTAATACTTGGACTTGAGAATGCATAGCATCATGAG
CAATCAGCCTTAGATTTCAGCAGATTGACTGCTTATGATGTTATTATCATTCCATGTAAACTCCAGCCAAATTAATTCTA
GCTGCTTGTCAAAACCCGCCGCCGTAGGCCGGAGCCCAAAAATCAGCTCCATTGTCATTTCCTACAAGCTGAGTGCAAGA
CACTGGAACCAAGCACAACCCTCTACTCTTTAAGTCCCTTGGCTTATCCTGTGTATCCTGGTTAGGAGCTTCCTTTCTTT
TTAGGCAGGCGTCATTCAACAACTGTCCGGGGTCTTCAGGAAATACACCATTTCTTTCTCCTTGAACAGACTGCTGGCTC
CTCATGTTTTTGGATGCATTACCAAAGTAAGGAGAGCTAAGGGCCTCAATTTGACCTTGAAGGAATCTGATATACCCAAT
GGCTTCTAACAAGACAGAAGCAGTGTCAGTCTTTCCAAATGGGGAAACTAGCTGGTGAAGGGATGTTATTCTATCACCAA
GCTTCTCCTTTCTCACCTGCTTTAAAGGTGGTTGGCTAGAAGTTGAAGAGGGCTGAACCCTAGCTTTCTTATATGCCCCA
CCAGTGGCTGAGCTAGTACTCTCAGATGAATGATCTAAATTTTGATTGCTCCCAT




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8L3X9|KASM_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase,
           mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1
          Length = 461

 Score = 90.1 bits (222), Expect(2) = 3e-27
 Identities = 42/67 (62%), Positives = 52/67 (77%)
 Frame = +2

Query: 191 HHVDYENAHATSTPLGDTVESTAIRTVFSDHATSSSLAFSSTNGDIDHLLAAPGPAEAIF 370
           + +DY NAHATSTP+GD VE+ AI+TVFS+HATS +LAFSST G   HLL A G  EAIF
Sbjct: 342 NQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIF 401

Query: 371 AVLTSYH 391
           ++L  +H
Sbjct: 402 SILAIHH 408



 Score = 53.5 bits (127), Expect(2) = 3e-27
 Identities = 25/37 (67%), Positives = 29/37 (78%)
 Frame = +3

Query: 57  SEIYTEVRDYGMSGDAHHITHPHIDGKRAILDMTRAL 167
           ++IY E+  YGMSGDAHHIT P  DGK A+L MTRAL
Sbjct: 298 AKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRAL 334


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  202 bits (514), Expect = 2e-51
 Identities = 109/157 (69%), Positives = 126/157 (80%), Gaps = 7/157 (4%)
 Frame = -3

Query: 710 KKARVQPSSTSSQPPLKQVRKEKLGDRITSLHQLVSPFGKTDTASVLLEAIGYIRFLQGQ 531
           KK R+QPS  SSQ  LK VRKEKLG RI +LHQLVSPFGKTDTASVL EAIGYIRFLQ Q
Sbjct: 248 KKPRLQPSP-SSQSTLK-VRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQ 305

Query: 530 IEALSSPYFG-NASKNMRSQQSVQGERNGVFPEDPGQLLNDACLKRKEA-----PNQDTQ 369
           IEALS PYFG  AS NMR QQ +QG+R+ +FPEDPGQL+ND C+KR+ A      NQ+  
Sbjct: 306 IEALSHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNAS 365

Query: 368 DKP-RDLKSRGLCLVPVSCTQLVGNDNGADFWAPAYG 261
           ++P +DL+SRGLCLVP+SCT  VG+DNGAD+WAPA G
Sbjct: 366 EEPKKDLRSRGLCLVPISCTLQVGSDNGADYWAPALG 402